Molecular Biology databases/Bioinformatics databases-Species Specific databases

Bioinformatics- Species Specific Databases

Human

OMIM - Online Mendelian Inheritance in Man
GENATLAS - Human genes atlas
GeneClinics - Medical genetics knowledge base
GDB - Genome Data Base
GeneCards - Db integrating information on human genes
The Genome Channel This system is a prototype graphical browser for querying the annotated reference genome.
UDB - Unified db for Human genome mapping
Ensembl Human genome browser
UCSC human genome working draft
TIGR HGI - TIGR Human Gene Index
Hs UniGene - Human transcripts in GenBank (EST clusters)
STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs)
Allgenes.org - Human predicted gene index/catalog
GenLink - Human genetics resource
GeneLynx - Portal to the human genome
GENOTK - Human cDNA db
HUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA...)
HUNT - Human Novel Transcripts
CGAP - Cancer Genome Anatomy Project
MGC - Mammalian Gene Collection
SCDb - Stem cell db
Homophila - Human Disease to Drosophila gene db

Chromosomes

Chr1 at Rutgers - Human chromosome 1 at Rutgers
Chr1 at Sanger - Sanger Center chromosome 1 project
Chr1 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 1
Chr2 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 2
Chr3 - Human chromosome 3 db at the University of Texas Health Science Center
Chr3 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 3
Chr4 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 4
Chr5 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 5
Chr6 at Sanger - Sanger Center chromosome 6 project
Chr6 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 6
Chr7 - Human chromosome 7 db at Ontario's Hospital for Sick Children
Chr7 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 7
Chr8 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 8
Chr9 at Sanger - Sanger Center chromosome 1 project
Chr9 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 9
Chr9 - Human chromosome 9 db
Chr10 at Sanger - Sanger Center chromosome 10 project
Chr10 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 10
11DB - Human chromosome 11 db at Imperial College (U.K.)
Chr11 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 11
Chr12 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 12
Chr13 at Sanger - Sanger Center chromosome 13 project
Chr13 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 13
Chr14 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 14
Chr15 UBC - Human chromosome 15 WWW page at UBC
Chr15 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 15
Chr16 LANL - Human chromosome 16 db at Los Alamos National Laboratory
Chr16 TIGR - Human chromosome 16 db at TIGR
Chr16 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 16
Chr17 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 17
Chr18 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 18
Chr18 - Human chromosome 18 at Boston Children's Hospital
Chr19 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 19
Chr20 at Sanger - Sanger Center chromosome 20 project
Chr20 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 20
Chr21 at RIKEN - Human chromosome 21 genome site at RIKEN (Japan)
Chr21 at ERI - Human chromosome 21 genomic sequence db from the Eleanor Roosevelt Institute
Chr21 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 21
Chr22 at Sanger - Sanger Center chromosome 22 project
Chr22 at HGC - Human genome center for chromosome 22
Chr22 Swiss-Prot list - Links to Swiss-Prot entries from human chromosome 22
ChrX at Sanger - Sanger Center chromosome 1 project
IXDB - Integrated X chromosome db
ChrX Swiss-Prot list - Links to Swiss-Prot entries from human chromosome X
ChrY Swiss-Prot list - Links to Swiss-Prot entries from human chromosome Y

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Human mutation resources/databases

HGMD - Human Gene Mutation db
SVD - EBI Sequence variation db
HGBASE - Human Genic Bi-Allelic Sequences db
GeneDis - Human genetic disease db
The SNP consortium
dbSNP - Human single nucleotide polymorphism (SNP) db
ALFRED - Allele Frequency Db
SeattleSNPs - UW-FHCRC Variation Discovery Resource
PicSNP - Catalog of non-synonymous SNP
List of mutation databases from OMIM
List of mutation databases from IMT (Finland)
ADAbase - Human adenosine deaminase (ADA) mutation db
ADB - Albinism db (Mutations in human genes causing albinism)
Albumin Web site
Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II)
APC mutation
AR mutations - Human androgen receptor mutation db
Antithrombin mutation db
Asthma and Allergy gene db
BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies
BLMbase - Human BLM mutation db (Bloom syndrome)
BTKbase - Human BTK mutation db (X-linked agammaglobulinemia)
CD3Ebase - Human CD3E mutation db
CD3Gbase - Human CD3G mutation db
CD40Lbase - Human CD40 ligand mutation db
COL1/3 mutation - Human Type I and III collagen mutation db
Connexin-deafness - Human connexins mutation db
CFTR mutation - Human cystic fibrosis mutation db (CFTR)
EMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy)
KMeyeDB - Eye disease genes db
FVII mutation - Human Factor VII mutation db
HAMSTeRS - Human Factor VIII mutation db (Haemophilia A)
HAeMB - Human Factor IX mutation db (Haemophilia B)
FBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome)
G6PD - Human G6PD deficiency resource
G6PDdb - Human G6PD mutation db
Galt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia)
GNAS1 - Human GNAS1 mutation db
GM2 gangliosidoses - Human Hexosaminidase A (HEXA), B (HEXB) and GM2A mutation db (Tay-Sachs/Sandhoff diseases)
HbVar - Hemoglobin variants db
Hereditary hearing loss homepage
IL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db (X-SCID)
L1CAM mutation - Human L1CAM mutation db
LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia)
LHR - Human luteinizing hormone (LH) receptor mutation db
LQTSdb - Long QT syndrome db
NCF1base - Human NCF1 mutation db
NCF2base - Human NCF2 mutation db
Neuromuscular diseases web site
NCL - Neuronal Ceroid Lipofuscinoses mutation db
NF1 - NF1 Genetic Mutation Analysis Consortium web site
OCRL1 - OCRL1 mutation db (Lowe Syndrome)
OTCase - Human ornithine transcarbamylase (OTCase) website
Cytochrome P450 alleles nomenclature
p53 mutation db - University of Tokyo p53 mutation db
Germline p53 mutation db - University of Prague db of germline p53 mutations
PAHdb - Human phenylalanine hydroxylase (PAH) mutation db
PAX2 mutation - Human PAX2 mutation db
PAX6 mutation - Human PAX6 mutation db
Prion - Prion and prion disease web site
RAG1base - Human RAG1 mutation db
RAG2base - Human RAG2 mutation db
RB1base - Human retinoblastoma-associated protein (RB) mutation db
RetNet - Retinal Information Network
Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases
Alsod.org - ALS/SOD1 genetic mutations db
TSC - TSC (TSC1/TSC2) variation db
TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2)
TGDB - Tumor gene db
VMD2 mutation - Human VMD2 mutation db
vWF mutation - Human von Willebrand factor (vWF) mutation db
WRN - Human WRN mutation db (Warner disease)
WT1 mutation - Human WT1 mutation db
X-ALD mutation - Human ABCD1 mutation db

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Vertebrates

OMIA - Online Mendelian Inheritance in Animals
MGI - Mouse Genome Informatics (includes MGD) [Mirrors in Australia | UK | Japan ] MGI - Mouse Genome Informatics (includes MGD) [Mirrors in Australia | UK | Japan ]
Ensembl Mouse genome browser
TIGR MGI - TIGR Mouse Gene Index
Mm UniGene - Mouse transcripts in GenBank (EST clusters)
MGC - Mammalian Gene Collection
Mouse gene knockouts db
Mouse chromosome 16 at Celera
RGD - Rat genome db
RatMAP - Rat genome db
TIGR RGI - TIGR Rat Gene Index
Rn Unigene - Rat transcripts in GenBank (EST clusters)
BovBASE - Bovine genome db (in UK)
BOVMAP - Bovine genome db (in France)
Ark-Cat - Cat genome db
HorseBASE - Horse genome db
DGP - Dog Genome Project
PiGBASE - Pig genome db
SheepBASE - Sheep genome db (also known as SheepMap)
MIS - Mendelian Inheritance in Sheep
Chickmap - Chicken genome db (ChickBase)
Turkey mapping db
FishBase - Global information system on fishes
Fugu genome project
Fugu - HGMP Resource Centre Fugu Project (Fugu rubripes)
Ensembl Fugu genome browser
Medakafish - Mekada fish (Oryzias latipes) server
Ark-Tilapia - Tilapia mossambica genome db
The fish net - Zebrafish server
Ensembl Zebrafish genome browser

Inveretbrates

WormBase - C.elegans db [Mirror at Sanger ]
C.elegans WWW server - at University of Texas Southwestern
ACeDb - Caenorhabditis elegans db
C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins
C.elegans EST - C.elegans EST db from Japan (Yuji Kohara's group)
C.elegans Swiss-Prot list - Links to C.elegans Swiss-Prot entries
WormPep - C.elegans proteins db
WormPD - C.elegans protein db
Dictystelium Genome Sequencing project at BCM
Dictyostelium discoideum genome project at IENA
DictyDb - Dictyostelium discoideum db
Dicty_cDB - Dictyostelium discoideum cDNA project
Cone shells Web site
Parasite genomes db and resources
Parasite genomes WWW site
PlasmoDB - P.falciparum genome db
Malaria - WHO - Malaria db (from WHO)
P.falciparum Sanger - P.falciparum genome project at Sanger
PFDB - Plasmodium falciparum Genome db
P.falciparum - Plasmodium falciparum Gene Sequence Tag project
MAD - Malaria Antigen db
Malaria parasite metabolic pathways
Giardia lamblia genome project
LGN - Leishmania Genome Network
ToxoDB - Toxoplasma gondii genome project
Trypanosoma brucei genome project
Trypanosoma cruzi genome project
kDNA - Kinetoplast Minicircle Sequence db

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Insects

Drosophila Swiss-Prot list - Links to Drosophila Swiss-Prot entries
FlyBase - Drosophila genetic and molecular db [Mirror at EBI ]
BDGP - Berkeley Drosophila Genome Project
FlyView - Drosophila image db
GIFTS - Gene Interactions in the Fly Trans-World Server
FlyNets - Db of molecular interactions in Drosophila melanogaster
Drosophila P450 Web site
Homophila - Human Disease to Drosophila gene db
Mosquito Genomics
AnoDB - Anopheles gambiae db
Ensembl Mosquito genome browser

Plants

NAL - AGIS - Access to many plant genome databases at the National Agricultural Library
Mendel - Plant gene nomenclature database from CPGN

ARS Genome Database Resource (Cornell)

ARS Genome Database Resource is primarily a site for communication of Plant Genome data among scientists worldwide. The medium is a set of genome databases, similar to the ones for Human genome mapping and sequencing. They include data about plant genes, chromosome maps, DNA fingerprints, beneficial traits, and crop varieties that possess those traits.
Arabidopsis Swiss-Prot list - Links to A.thaliana WWW sites and to Swiss-Prot entries
TAIR - The Arabidopsis Information Resource
MATDB - MIPS Arabidopsis thaliana db
TIGR At - TIGR Arabidopsis thaliana db
Arabidopsis ABC transporters
AMPL - Arabidopsis Membrane Protein Library
Arabidopsis at PlaCe - Site with info on P450, glucosyltransferases, etc.
Gramene - A comparative mapping resource for grains
KOMUGI (Japan)
GrainGenes , a genome database for Triticeae and related species. RiceGenes a genome database for rice.
RGP - Rice Genome Research Program
Oryzabase - Japanese rice genome db
RiceGAAS: Rice Genome Annotation Database
A rice genome automated annotation system; integrates programs for prediction and analysis of protein-coding gene structure.
Rice genome project at Wisconsin
Rice-research.org - Monsanto rice genome site
TIGR OsGI - TIGR Rice Genome project
BeanGenes - Beans genome db
BeanRef-Links and references from literature to different aspects of research on beans (Phaseolus and Vigna) - Beans genome db and other resources
Chlamydomonas resource center
ChlamyDB - Chlamydomonas reinhardtii genome db
CottonDB - Cotton genome db
MaizeDb - Maize genome db
Mendel Bioinformatics Group , UK
Mendel-ESTS , contains all of the plant EST and STS sequences currently in dbEST and dbSTS (>94,000) related to the sequences, grouped by gene family, in the Gene Family Database .
Mendel-GFDb Database of Genes Organized by Families. Now with Pfam, Prosite & TRANSFAC domain information
Mendel-CPGN : developinging a common nomenclature for sequenced plant genes
INRA Maize - INRA Maize genome db
Plant Chromatin Database
Database for chromatin proteins in plants, including functions and molecular phylogenetic relationships, with initial emphasis on Arabidopsis and maize
Pisum sativum (pea) web site
TIGR Potato - TIGR Potato Functional Genomics project
TIGR GmGI - TIGR Soybean Gene Index
Snapdragon (A.majus) web site
SolGenes -- Genome Database for the Solanaceae
A U.S.D.A.-funded Genome Database for the Solanaceae, containing information about potatoes, tomatoes, peppers, and related species.
SorghumDB - Sorghum genome db
SIU-C Soy Phytoestrogen Gene Mapping
SoyBase - Soybean genome db
SoyBase metabolic db - Metabolic subset of the soybean genome db
TIGR LeGI - TIGR Tomato Gene Index
Dendrome - Forest trees genome db
ZmDB Maize Genome Database
Goals include discovering maize genes using EST sequencing and engineered Mu (RescueMu) tagging, and developing new tools to facilitate gene mapping and phenotypic analysis.

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Fungi

FGSC - Fungal Genetics Stock Center
FGR - Fungal Genome Resource
Yeast Swiss-Prot list - Links to S.cerevisiae WWW sites and to Swiss-Prot entries
CYGD - MIPS Comprehensive Yeast Genome db
SGD - Saccharomyces genome db
MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis
Yeast snoRNA - Yeast small nucleolar RNAs db
YTPdb - Yeast Transport Protein db
YMPL - Yeast Membrane Protein Library
PathCalling - Yeast protein-protein interaction db
S.pombe Swiss-Prot list - Links to S.pombe WWW sites and to Swiss-Prot entries
GeneDB_SPombe - Schizosaccharomyces pombe GeneDB
S.pombe genome project
S.pombe NIH - S.pombe server at the NIH
Forsburg lab pombe pages
AGD - Ashbya genome db
Aspergillus web site
C.albicans Swiss-Prot list - Links to C.albicans WWW sites and to Swiss-Prot entries
Candida albicans - Candida albicans server at the Univ. of Minnesota
CandidaDB - Candida albicans genome db
Neurospora crassa db
NGP - Neurospora crassa genome project
PC - Pneumocystis carinii genome project
Phycomyces Web site - Resource site for scientists working on Phycomyces

Bacteria

WDCM - World Data Center for Microorganisms
List of Bacterial Names with Standing in Nomenclature
CMR - TIGR Comprehensive Microbial Ressource
GIB - Genome information broker for Microbial genomes
GeneQuiz
HOBACGEN - Homologous Bacterial Genes db
Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen
BPGD - Bacterial polysaccharide gene db
Bacterial quorum sensing
MicrobeWorld - Educational site on microbes
E.coli Swiss-Prot list - Links to E.coli WWW sites and to Swiss-Prot entries
EcoWeb / EcoGene - Very comprehensive E.coli db
ECCE - E.coli Cell Envelope Protein Data Collection
ECDC - E.coli db collection
EcoCyc - Encyclopedia of E.coli genes and metabolism
GenProtEC - E.coli genome and proteome db
Colibri - E.coli genome db from Pasteur Institute
ECGC - E.coli Genome Center at Wisconsin University
DDBJ E.coli - E.coli home page at DDBJ
EcoReg - The E.coli regulation consortium
B.subtilis Swiss-Prot list - Links to B.subtilis WWW sites and to Swiss-Prot entries
SubtiList - Bacillus subtilis genomic db
NRSub - Bacillus subtilis non-redundant db [Mirror in Japan ]
Micado - Microbial advanced db (B.subtilis + E.coli)
BSORF - Japanese server on B.subtilis
DBTBS - Db of B.subtilis promoters and transcription factors
A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project
B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site
B.halodurans - Bacillus halodurans strain C-125 db
B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project
BGDB - Bordetella genome db
B.bronchiseptica - Bordetella bronchiseptica strain RB50 genome project at Sanger Institute
B.parapertussis - Bordetella parapertussis strain 12822 genome project at Sanger Institute
B.pertussis - Bordetella pertussis strain Tohama I genome project at Sanger Institute
BbDB - TIGR Borrelia burgdorferi genome db
B.aphidicola Swiss-Prot list - Links to B.aphidicola Swiss-Prot entries
iBGD - Integrated Buchnera genome db
B.cepacia - Burkholderia cepacia genome project
C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project
Chlamydia - Chlamydia pneumoniae and trachomatis
C.muridarum - Chlamydia muridarum strain MoPn genome db at TIGR
C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at TIGR
C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db http://www.brgene.lncc.br/indexCV.html
C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute
C.acetobutylicum - GTC Clostridium acetobutylicum strain ATCC 824 data
C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute
C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute
C.ruminantium - Cowdria ruminantium genome project at Sanger Institute
C.hutchinsonii - Cytophaga hutchinsonii genome project
DrDB - TIGR Deinococcus radiodurans strain R1 genome db
D.hafniense - Desulfitobacterium hafniense genome project
E.faecium - Enterococcus faecium genome project
F.acidarmanus - Ferroplasma acidarmanus genome project
F.tularensis - Francisella tularensis genome WWW site
H.influenzae Swiss-Prot list - Links to H.influenzae WWW sites and to Swiss-Prot entries
HiDB - Haemophilus influenzae genome db at TIGR
H.pylori Swiss-Prot list - Links to H.pylori WWW sites and to Swiss-Prot entries
HpDB - Helicobacter pylori strain 26695 genome db at TIGR
H.pylori J99 - Helicobacter pylori strain J99 genome db at Astra
PyloriGene - Helicobacter pylori genomic db
L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db
L.plantarum - Lactobacillus plantarum genome project
ListiList - Listeria monocytogenes and Listeria innocua genome db
MC-1 - Magnetococcus MC-1 genome project
M.magnetotacticum - Magnetospirillum magnetotacticum genome project
MycDB - Mycobacterium db
M.bovis - Mycobacterium bovis strain AF2122/97 genome project
Leproma - Mycobacterium leprae strain TN genome db
M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute
TubercuList - Mycobacterium tuberculosis strain H37Rv genome db
MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at TIGR
M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute
M.tuberculosis secreted proteins
M.tuberculosis structural genomics consortium
M.genitalium Swiss-Prot list - Links to M.genitalium Swiss-Prot entries
MgDB - Mycoplasma genitalium genome db at TIGR
M.pneumoniae Swiss-Prot list - Links to M.pneumoniae Swiss-Prot entries
M.pneumoniae - Mycoplasma pneumoniae genome project
MypuList - Mycoplasma pulmonis genome db
Mycoplasma synoviae genome db
N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute
N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at TIGR
N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project
N.europaea - Nitrosomonas europaea genome project
N.punctiforme - Nostoc punctiforme genome project
P.marinus - Prochlorococcus marinus genome project
P.aeruginosa project - Pseudomonas aeruginosa genome project
P.aeruginosa db - Pseudomonas aeruginosa genome db
P.fluorescens - Pseudomonas fluorescens genome project
R.solanacearum - Ralstonia solanacearum genome project
Rhizobium pNGR234a Swiss-Prot list - Links to Rhizobium plasmid pNGR234a Swiss-Prot entries
Rhizobium pNGR234a analysis
RsGDB - Rhodobacter sphaeroides genome db
R.sphaeroides - Rhodobacter sphaeroides genome project
R.palustris - Rhodopseudomonas palustris genome project
RicBase - Rickettsia conorii strain Malish 7 genome project
R.prowazekii Swiss-Prot list - Links to Rickettsia prowazekii Swiss-Prot entries
R.prowazekii - Rickettsia prowazekii strain Madrid E genome project
S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute
S.typhimurium Swiss-Prot list - Links to S.typhimurium Swiss-Prot entries
S.typhimurium - S.typhimurium genome project
RhizoBase - Sinorhizobium loti genome project
S.meliloti - Sinorhizobium meliloti genome project
S.aromaticivorans - Sphingomonas aromaticivorans genome project
S.aureus - Staphylococcus aureus strain NCTC 8325 genome project
S.mutans - Streptococcus mutans strain UAB159 genome project
S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project
S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute
S.suis - Streptococcus suis genome project at Sanger Institute
S.uberis - Streptococcus uberis genome project at Sanger Institute
S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute
S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project
PCC 6803 Swiss-Prot list - Links to Synechocystis PCC 6803 Swiss-Prot entries
CyanoBase - Synechocystis PCC 6803 db
Synechococcus - Marine synechococcus genome project
T.fusca - Thermomonospora fusca genome project
TmDB - Thermotoga maritima genome db at TIGR
TpDB - Treponema pallidum genome db at TIGR
T.erythraeum - Trichodesmium erythraeum genome project
T.whipplei - Tropheryma whipplei genome project at Sanger Institute
U.urealyticum - Ureaplasma urealyticum genome WWW site
VcDB - Vibrio cholerae genome db at TIGR
Xanthomonas - Xanthomonas genome projects
X.fastidiosa - Xylella fastidiosa genome WWW site
X.fastidiosa at DOE - DOE Xylella fastidiosa genome project
Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute
Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute
Y.pestis at CNBP - Yersinia pestis genome WWW site

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Viruses & Phages

All the virology on the WWW - links to virology WWW servers by David M. Sander
ICTVdB - Universal virus taxonomy db
AVIS - Animal Virus Information System
Plants Viruses Online - Information on plant viruses
Adenoviruses web site
HCVDB - Hepatitis C virus db
HIV - HIV and related species db
HPV - Human papillomaviruses db
Influenza sequence db
Picornavirus - Picornavirus home page and access to db
Tobamoviruses
PhageBase
Bacteriophage ecology group
GOLD - Genomes On-line db
DOGS - Database of genome sizes

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Archaea

A.pernix - Aeropyrum pernix K1 genome db
AfDB - Archaeoglobus fulgidus genome db at TIGR
Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project
M.thermoautotrophicum - Methanobacterium thermoautotrophicum genome db
M.jannaschii Swiss-Prot list - Links to M.jannaschii Swiss-Prot entries
MjDB - Methanococcus jannaschii genome db at TIGR
MjFdb - Methanococcus jannaschii functions db
M.barkeri - Methanosarcina barkeri genome project
Pyrococcus abyssi genome and re-annotation db
P.abyssi - Pyrococcus abyssi genome project and db
P.furiosus - Pyrococcus furiosus genome project
P.horikoshii - Pyrococcus horikoshii OT3 db
SGP - Sulfolobus solfataricus strain P2 genome project
T.acidophilum - Thermoplasma acidophilum genome project
T.volcanium - Thermoplasma volcanium genome project

Mitochondrian & Chloroplast

GOBASE - Organelle Genome Database
MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear genes)
MITOMAP - Human mitochondrial genome db
MmtDB - Metazoa mitochondrial DNA variants db
MitBASE - Integrated mitochondrial DNA db
MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis
HvrBase - Primates mtDNA control region sequences compilation
MOUSE - Mitochondrial and Other Useful SEquences (human and apes mit. DNA db)
C.caldarium - Cyanidium caldarium strain RK1 chloroplast genome

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