In the X-Files movie that they released on video, they added two scenes that I have caught. One is at the end were Mulder is dressing Scully in her in the outer layer of his snow suit (I think that was added), and the other in the car when the Well-Manicured Man gives Mulder the means to save Scully. Here I that scene. It runs from 1:29:52 to 1:31:22. (If you start your VCR a the very beginning)Well-Manicured Man- ...Do you see why it was kept a secret? Why even the best men, men like you father could not let the truth be known. Until Dallas we believed the virus would simply control us, that it would make us a slave race. Imagine our surprise when it gestated. My group has been working cooperatively with the alien colonists, facilitating programs like the one you saw to give us access to the virus in hope that we might be able to secretly develop a cure.
Mulder- To save you own asses.
Well-Manicured Man- Survival is the ultimate ideology. Your father wisely refused to believe this.
Mulder- But he sacrificed my sister; he let them take Samantha.
Well-Manicured Man- Without a vaccination the only true survivors of a viral holocaust will be those who are immune; human alien clones. He allowed your sister to be abducted, to be taken to a cloning program for one reason.
Mulder- So she would survive as a genetic hybrid.
Well-Manicured Man- Your father chose hope over selflessness. Hope in the only future he had, his children. His hope for you was that you would uncover the truth behind this project. That you would stop it. That you would fight the future.
Mulder- Why are you telling me this?
Well-Manicured Man- For my own children...
Now the title of the film makes more sense.